If I understand correctly,
You have two audio files.
- File “A” is the original.
- File “B” is a copy of “A”.
- File “B” has been trimmed at both the start and the end so that it is shorter than “A”.
You want a new file / audio track (“C”), that:
- is a copy of “A”,
- is trimmed at the start the same as “B”,
- has less trimmed from the end than “B” had, so that it is longer than “B”.
and the part that you want help with is:
- how to trim the start of “C” so that the start of the track is the same as “B”
If I’ve got that right, then it’s not hard to do, but does require some careful, manual editing (there is no way to automatically / magically align the tracks).
The way to do it is to import both “A” and “B” into Audacity:

Line them up approximately by eye, using the Time Shift Tool.

Zoom in on track “B” and find a part that is easily recogniseable:

Adjust the position of “B” so that it matches more closely with “A”

Continue zooming and adjusting until the tracks are precisely aligned.
It can help to switch back to the normal selection tool (F1 key), click on the upper track, then press the “down” cursor key, so that you then have a vertical line spanning the two tracks like this:

“F5” key to go back to the Time Shift Tool.
Note that you can move the vertical line left / right with the left / right cursor keys.

When you have the position as accurate as required, zoom back out as necessary to see the start of track “B”.
Switch to the normal selection tool (“F1”) and double click on the audio clip in track “B” to select it:

“Up” arrow, then “Enter” to add track “A” to the selection, then “Ctrl + i” to “split” the track:

Click on the right hand split line to “join” the split, then double click in the left hand clip of track “A”

You can now delete the selected start of track “A”, and hopefully that has done what you wanted.
