I am making a series of vocal recordings using a modular system. I record a few sections, do the necessary tweaking, save them as separate files and then insert those audio track sections (via cut and paste) into a custom recording which is then saved as a file itself and then exported to wav and mp3 format.
I did one of these with no problems, but the second one has been very frustrating. When I opened it, a large section was missing (middle of screenshot) and there was large gap in the recording itself (right third of screenshot). I deleted the gaps and pasted in the missing material, saved the file, but upon reopening the file the gaps were still there. I also tried saving the repaired file under a new filename and it also opens with the gaps.

I spent hours making this recording and it's very frustrating to have this keep happening. Any suggestions or advice would be helpful.